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| Distribution |
Debian testing |
| Abteilung |
science |
| Quelle |
t-coffee |
| Version |
8.47-1 |
| Maintainer |
Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
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| Beschreibung |
T-Coffee is a multiple sequence alignment package. Given a set of
sequences (Proteins or DNA), T-Coffee generates a multiple sequence
alignment. Version 2.00 and higher can mix sequences and structures.
.
T-Coffee allows the combination of a collection of multiple/pairwise,
global or local alignments into a single model. It also allows to
estimate the level of consistency of each position within the new
alignment with the rest of the alignments. See the pre-print for more
information
.
T-Coffee has a special called M-Coffee that makes it possible to combine the
output of many multiple sequence alignment packages. In its published version,
it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and
T-Coffee. A special version has been made for Debian, DM-Coffee, that uses
only free software by replacing Clustal W by Kalign. Using the 8 Methods of
M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite
methods if you prefer.
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| Abhängig von | libc6 (>= 2.7) | | Recommends | libsoap-lite-perl | | Vorgeschlagen | boxshade, clustalw, dialign-tx, kalign, mafft, muscle, poa, probcons, seaview, t-coffee-doc, t-coffee-examples |
| Offizielle Seiten |
Paket
Entwicklerinformationen
Bugs (Binärpaket)
Bugs (Quellpaket) |
| Download |
amd64 |
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