amap-align | Protein multiple alignment by sequence annealing | Mehr ...
AMAP is a command line tool to perform multiple alignment of peptidic sequences. It utilizes posterior decoding, and a sequence-annealing alignment, instead of the traditional progressive alignment method. It is the only alignment program that allows to control the sensitivity / specificity tradeoff. It is based on the ProbCons source code, but uses alignment metric accuracy and eliminates the consistency transformation. . The java visualisation tool of AMAP 2.2 is not yet packaged in Debian.
