Entwicklerinformationen
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libbiojava-java | Java API to biological data and applications | Mehr ... |
BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It includes objects for manipulating sequences, file parsers, DAS client and server support, access to BioSQL and Ensembl databases, and powerful analysis and statistical routines including a dynamic programming toolkit. . BioJava is provided by a vibrant community which meets annually at the Bioinformatics Open Source Conference (BOSC) that traditionally accompanies the Intelligent Systems in Molecular Biology (ISMB) meeting. Much like BioPerl, the employment of this library is valuable for everybody active in the field because of the many tricks of the trade one learns just by communicating on the mailing list. . If using BioJava, please cite: R.C.G. Holland, T. Down, M. Pocock, A. Prlić, D. Huen, K. James, S. Foisy, A. Dräger, A. Yates, M. Heuer; M.J. Schreiber (2008) "BioJava: an Open-Source Framework for Bioinformatics" Bioinformatics 24(18):2096-2097. . This is a wrapper package which should enable smooth upgrades to new versions. |
libbiojava-java-demos | Example programs for BioJava | Mehr ... |
The package comes with a wealth of use cases for BioJava. It is generated together with the API documentation but because of its size of ~3.7MB it was decided to distribute it separately. |
libbiojava-java-doc | [Biology] Documentation for BioJava | Mehr ... |
This package contains the HTML documentation describing the API of BioJava which was generated automatically by JavaDoc. |
libbiojava1.6-java | Java API to biological data and applications | Mehr ... |
This package presents the Open Source Java API to biological databases and a series of mostly sequence-based algorithms. The APIs are not compatible between versions. In analogy to the dealing with shared libraries of the C language, the jar file of this package has the API version in its name. It is symbolically linked to the expected biojava.jar filename in the package libbiojava-java. This will help keeping multiple versions of the biojava API in parallel. |
libbiojava1.7-java | Java API to biological data and applications | Mehr ... |
This package presents the Open Source Java API to biological databases and a series of mostly sequence-based algorithms. The APIs are not compatible between versions. In analogy to the dealing with shared libraries of the C language, the jar file of this package has the API version in its name. It is symbolically linked to the expected biojava.jar filename in the package libbiojava-java. This will help keeping multiple versions of the biojava API in parallel. |