HTTP

Stichwortsuche
Paketsuche

Debianpakete
  appconfig
  cgi-extratags-perl
  ciphersaber
  courier
  courier
  courier-authlib
  dbix-easy-perl
  debaux
  interchange
  interchange-doc
  jfsutils
  libmime-lite-html-perl
  libtext-mediawikiformat-perl
  libtie-shadowhash-perl
  pure-ftpd
  pure-ftpd
  safe-hole-perl
  set-crontab-perl

Kunden/Partner
  B&N
  Box of Rain
  COBOLT NetServices
  ecoservice
  Gish Network
  IIP/IR Vienna
  Informa
  L & D Computer
  LinSoft IT
  M & D
  materialboerse.de
  Media Business Software
  Medical Business Solutions
  Net Stores
  NextCall
  RUEB
  Tenalt
  Transfair-Net GmbH
  Ulisses
  WebHostNY.com
  Wegacell
  West Branch Angler
  Wintime IT Solutions

alien-hunter: Interpolated Variable Order Motifs to identify horizontally acquired DNA

Distribution Debian unstable
Abteilung science
Quelle alien-hunter
Version 1.7-1
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Beschreibung Alien_hunter is an application for the prediction of putative
Horizontal Gene Transfer (HGT) events with the implementation of
Interpolated Variable Order Motifs (IVOMs). An IVOM approach
exploits compositional biases using variable order motif distributions
and captures more reliably the local composition of a sequence compared
to fixed-order methods. Optionally the predictions can be parsed into a
2-state 2nd order Hidden Markov Model (HMM), in a change-point detection
framework, to optimize the localization of the boundaries of the
predicted regions. The predictions (embl format) can be automatically
loaded into Artemis genome viewer freely available at:
http://www.sanger.ac.uk/Software/Artemis/.
.
The manuscript describing the alien_hunter algorithm is available
from Bioinformatics: Interpolated variable order motifs for
identification of horizontally acquired DNA: revisiting the
Salmonella pathogenicity islands. Vernikos GS, Parkhill J
Bioinformatics. 2006;. PMID: 16837528
Abhängig vonlibbiojava-java, libbytecode-java, libcommons-cli-java, libcommons-collections-java, libcommons-dbcp-java, libcommons-pool-java
Vorgeschlagenbioperl
Offizielle Seiten Paket Entwicklerinformationen Bugs (Binärpaket) Bugs (Quellpaket)
Download all





 Projekte

 Marktplatz für Musikinstrumente und Zubehör
 Mehr erfahren ...

 

 Systemadministration für Internetagentur
 Mehr erfahren ...

 

 Foreign Service National Training Database
 Mehr erfahren ...

 

 Reengineering e-procurement System
 Mehr erfahren ...

 

 Marktplatz für elektronische Bauelemente
 Mehr erfahren ...