Interchange Perl DBI MySQL

Stichwortsuche
Paketsuche

Debianpakete
  appconfig
  cgi-extratags-perl
  ciphersaber
  courier
  courier
  courier-authlib
  dbix-easy-perl
  debaux
  interchange
  interchange-doc
  jfsutils
  libmime-lite-html-perl
  libtext-mediawikiformat-perl
  libtie-shadowhash-perl
  pure-ftpd
  pure-ftpd
  safe-hole-perl
  set-crontab-perl

Kunden/Partner
  B&N
  Box of Rain
  Caithness Energy, LLC
  COBOLT NetServices
  ecoservice
  Gish Network
  IIP/IR Vienna
  Informa
  L & D Computer
  LinSoft IT
  M & D
  materialboerse.de
  Media Business Software
  Medical Business Solutions
  Net Stores
  NextCall
  RUEB
  Tenalt
  Transfair-Net GmbH
  Ulisses
  WebHostNY.com
  Wegacell
  West Branch Angler
  Wintime IT Solutions

sim4: tool for aligning cDNA and genomic DNA

Distribution Debian unstable
Abteilung science
Quelle sim4
Version 0.0.20030921-3
Maintainer Debian-Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Beschreibung sim4 is a similarity-based tool for aligning an expressed DNA sequence
(EST, cDNA, mRNA) with a genomic sequence for the gene. It also detects end
matches when the two input sequences overlap at one end (i.e., the start of
one sequence overlaps the end of the other).
.
sim4 employs a blast-based technique to first determine the basic matching
blocks representing the "exon cores". In this first stage, it detects all
possible exact matches of W-mers (i.e., DNA words of size W) between the two
sequences and extends them to maximal scoring gap-free segments. In the
second stage, the exon cores are extended into the adjacent as-yet-unmatched
fragments using greedy alignment algorithms, and heuristics are used to favor
configurations that conform to the splice-site recognition signals (GT-AG,
CT-AC). If necessary, the process is repeated with less stringent parameters
on the unmatched fragments.
Abhängig vonlibc6 (>= 2.7-1)
Offizielle Seiten Paket Entwicklerinformationen Bugs (Binärpaket) Bugs (Quellpaket)
Download amd64





 Projekte

 Marktplatz für Musikinstrumente und Zubehör
 Mehr erfahren ...

 

 Marktplatz für elektronische Bauelemente
 Mehr erfahren ...

 

 Reengineering e-procurement System
 Mehr erfahren ...

 

 Systemadministration für Internetagentur
 Mehr erfahren ...

 

 Foreign Service National Training Database
 Mehr erfahren ...