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Distribution |
Debian unstable |
Abteilung |
science |
Quelle |
dialign-t |
Version |
1.0.2-1 |
Maintainer |
Debian-Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
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Beschreibung |
DIALIGN-TX is a command line tool to perform multiple alignment of protein or DNA sequences. It is a complete reimplementation of the segment-base approach including several new improvements and heuristics that significantly enhance the quality of the output alignments compared to DIALIGN 2.2 and DIALIGN-T. For pairwise alignment, DIALIGN-TX uses a fragment-chaining algorithm that favours chains of low-scoring local alignments over isolated high-scoring fragments. For multiple alignment, DIALIGN-TX uses an improved greedy procedure that is less sensitive to spurious local sequence similarities. . DIALIGN-TX has been published in Amarendran R. Subramanian, Michael Kaufmann, Burkhard Morgenstern: Improvement of the segment-based approach for multiple sequence alignment by combining greedy and progressive alignment strategies, Algorithms for Molecular Biology 3:6, 2008
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Abhängig von | dialign-tx-data (= 1.0.2-1), libc6 (>= 2.7-1) | Provides | dialign-t, dialign-t-doc | Ersetzt | dialign-t, dialign-t-doc | Kollidiert mit | dialign-t, dialign-t-doc |
Offizielle Seiten |
Paket
Entwicklerinformationen
Bugs (Binärpaket)
Bugs (Quellpaket) |
Download |
amd64 |
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