| dialign-t | Segment-based multiple sequence alignment | Mehr ... |
DIALIGN-T is a command line tool to perform multiple alignment of protein or
DNA sequences. It is a complete reimplementation of the segment-base approach
including several new improvements and heuristics that significantly enhance
the quality of the output alignments compared to DIALIGN 2.2. For pairwise
alignment, DIALIGN-T uses a fragment-chaining algorithm that favours chains of
low-scoring local alignments over isolated high-scoring fragments. For
multiple alignment, DIALIGN-T uses an improved greedy procedure that is less
sensitive to spurious local sequence similarities.
.
DIALIGN-T has been published in Amarendran R. Subramanian, Jan Weyer-Menkhoff,
Michael Kaufmann, Burkhard Morgenstern: DIALIGN-T: An improved algorithm for
segment-based multiple sequence alignment. BMC Bioinformatics 2005, 6:66. |
| dialign-t-data | Common data files for dialign-t | Mehr ... |
| dialign-tx | Segment-based multiple sequence alignment | Mehr ... |
DIALIGN-TX is a command line tool to perform multiple alignment of protein or
DNA sequences. It is a complete reimplementation of the segment-base approach
including several new improvements and heuristics that significantly enhance
the quality of the output alignments compared to DIALIGN 2.2 and DIALIGN-T.
For pairwise alignment, DIALIGN-TX uses a fragment-chaining algorithm that
favours chains of low-scoring local alignments over isolated high-scoring
fragments. For multiple alignment, DIALIGN-TX uses an improved greedy
procedure that is less sensitive to spurious local sequence similarities.
.
DIALIGN-TX has been published in Amarendran R. Subramanian, Michael Kaufmann,
Burkhard Morgenstern: Improvement of the segment-based approach for multiple
sequence alignment by combining greedy and progressive alignment strategies,
Algorithms for Molecular Biology 3:6, 2008 |
| dialign-tx-data | Common data files for dialign-tx | Mehr ... |
