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t-coffee: Multiple Sequence Alignment

Distribution Debian unstable
Abteilung science
Quelle t-coffee
Version 8.47-1
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Beschreibung T-Coffee is a multiple sequence alignment package. Given a set of
sequences (Proteins or DNA), T-Coffee generates a multiple sequence
alignment. Version 2.00 and higher can mix sequences and structures.
.
T-Coffee allows the combination of a collection of multiple/pairwise,
global or local alignments into a single model. It also allows to
estimate the level of consistency of each position within the new
alignment with the rest of the alignments. See the pre-print for more
information
.
T-Coffee has a special called M-Coffee that makes it possible to combine the
output of many multiple sequence alignment packages. In its published version,
it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and
T-Coffee. A special version has been made for Debian, DM-Coffee, that uses
only free software by replacing Clustal W by Kalign. Using the 8 Methods of
M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite
methods if you prefer.
Abhngig vonlibc6 (>= 2.7)
Recommendslibsoap-lite-perl
Vorgeschlagenboxshade, clustalw, dialign-tx, kalign, mafft, muscle, poa, probcons, seaview, t-coffee-doc, t-coffee-examples
Offizielle Seiten Paket Entwicklerinformationen Bugs (Binrpaket) Bugs (Quellpaket)
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