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tree-ppuzzle: Parallelized reconstruction of phylogenetic trees by maximum likelihood

Distribution Debian unstable
Abteilung science
Quelle tree-puzzle
Version 5.2-6
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Beschreibung TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that
implements a fast tree search algorithm, quartet puzzling, that allows
analysis of large data sets and automatically assigns estimations of support
to each internal branch. TREE-PUZZLE also computes pairwise maximum
likelihood distances as well as branch lengths for user specified trees.
Branch lengths can also be calculated under the clock-assumption. In
addition, TREE-PUZZLE offers a novel method, likelihood mapping, to
investigate the support of a hypothesized internal branch without
computing an overall tree and to visualize the phylogenetic content of
a sequence alignment.
.
This is the parallelized version of tree-puzzle.
Abhängig vonlibc6 (>= 2.7), libopenmpi1.3, libsprng2, openmpi-bin
Recommendstree-puzzle-doc
Vorgeschlagenphylip, treetool
Offizielle Seiten Paket Entwicklerinformationen Bugs (Binärpaket) Bugs (Quellpaket)
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